#NEXUS
[written Sun May 04 15:10:29 PDT 2008 by Mesquite  version 2.01+ (build j65) at Thrandina.local/10.0.1.8 (Wayne Maddison)]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=16;
	TAXLABELS
		A B C D E F G H I J K L M N O P 
	;
	BLOCKID WM114891ea28156;

END;


BEGIN CHARACTERS;
	TITLE  'Matrix in file "01-editContinuous.nex"';
	DIMENSIONS  NCHAR=5;
	FORMAT DATATYPE = CONTINUOUS;
CHARSTATELABELS 
		1 length,
		2 width,
		3 speed,
		4 temperature,
		5 personality ; 
	MATRIX
	A   9.367 5.022 2.763 38.57 1.723
	B   8.793 3.244 4.664 38.81 0.296
	C   8.576 6.245 2.528 38.5 -1.0239
	D   11.54 8.718 5.862 40.54 -2.039
	E   9.977 6.082 5.984 38.32 0.7256
	F   9.381 5.468 4.398 38.48 1.213
	G   8.162 5.782 4.894 39.69 0.8212
	H   8.676 4.86 4.186 39.61 0.5508
	I   9.356 6.75 4.649 38.01 0.795
	J   8.107 5.989 2.975 40.13 -1.686
	K   9.692 7.227 5.747 39.52 -0.8719
	L   8.902 6.05 4.337 37.5 -0.9571
	M   9.055 6.575 4.896 40.48 -0.293
	N   10.11 4.199 3.327 38.94 -0.1349
	O   10.2 3.975 4.623 37.1 -0.4575
	P   7.604 5.438 2.809 37.69 -2.129

;
		BLOCKID WM114891ea2940;


END;
BEGIN NOTES;

	TEXT  FILE TEXT = 'Mesquite can handle continuous data as well as categorical.  In the spreadsheet at left are 5 characters for 16 taxa.^n^nMore details about editing data matrices, including continuous-valued, in the introductory examples for characters.  In particular look at the file linked by the blue window.^n^nIn the following examples, some analyses of continuous valued data are shown.  The reader should keep in mind that other packages of modules with many more analyses have been under development, including Rhetenor by Dyreson and Maddison, which does basic multivariate analyses and geometric morphometrics.';

END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  Squared:  1 -  5;

END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  Brownian_default:  1 -  5;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 156393696224404377 WM114891ea28156;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 8888556603099012391 WM114891ea2940;
			checksum 0 487214761 WM114891ea2940;
		endTell;
		getWindow;
		tell It;
			setResourcesState false false 100;
			setPopoutState 343;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1098 500;
			setLocation 7 22;
			setFont SanSerif;
			setFontSize 10;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #8888556603099012391 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 20;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 655 443;
					setLocation 7 22;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleShowChanges on;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames on;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					setColumnWidth 66;
					toggleBirdsEye off;
					toggleAllowAutosize on;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
			endTell;
		endTell;
		newAssistant  #mesquite.basic.ExamplesNavigator.ExamplesNavigator;
		tell It;
			setNextFileName '03-trace.nex';
			setPrevFileName '../introduction.nex';
			getWindow;
			tell It;
					popAsTile true;
					popOut;
					setExplanationSize 0;
					setAnnotationSize 0;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 337 483;
					setLocation 7 22;
					setFont SanSerif;
					setFontSize 10;
				setExplanation 'Mesquite can handle continuous data as well as categorical.  In the spreadsheet window shown here are 5 characters for 16 taxa.^n^nMore details about editing data matrices, including continuous-valued, are in the introductory examples for characters.  ^n^nIn the following examples, some analyses of continuous valued data are shown.  The reader should keep in mind that other packages of modules with many more analyses have been under development, including Rhetenor by Dyreson and Maddison, which does basic multivariate analyses and geometric morphometrics.';
				setTitle Continuous_data;
				toggleFileNames off;
				setPrevButtonName Return;
				setNextButtonName Next;
				addFileLink Editing_matrices  '../characters/12-continuous.nex';
			endTell;
			showWindow;
		endTell;
		endTell;
end;