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Class mesquite.lib.TaxaPartition 

java.lang.Object
   |
   +----mesquite.lib.Listened
           |
           +----mesquite.lib.Associable
                   |
                   +----mesquite.lib.AssociableWithSpecs
                           |
                           +----mesquite.lib.FileElement
                                   |
                                   +----mesquite.lib.SpecsSet
                                           |
                                           +----mesquite.lib.ObjectSpecsSet
                                                   |
                                                   +----mesquite.lib.TaxaPartition
public class TaxaPartition
extends mesquite.lib.ObjectSpecsSet
A TaxaPartition is a specification of which property applies to each taxon (TAXAPARTITION in NEXUS file format).

Constructor Index

o TaxaPartition(String, int, Object, Taxa)

Method Index

o cloneSpecsSet()
o getGroups()
Returns an array of all the partition numbers
o getNewPropertyStorage(int)
gets storage for set of properties
o getNumberInGroup(TaxaGroup)
o getNumberOfGroups()
o getTaxa()
o getTaxaGroup(int)
o getTaxaGroup(Taxon)
o getTypeName()

Constructors

o TaxaPartition 
 public TaxaPartition(java.lang.String name,
                      int numTaxa,
                      java.lang.Object defaultProperty,
                      mesquite.lib.Taxa taxa)

Methods

o cloneSpecsSet 
 public mesquite.lib.SpecsSet cloneSpecsSet()
Overrides:
cloneSpecsSet in class mesquite.lib.SpecsSet
o getTaxa 
 public mesquite.lib.Taxa getTaxa()
o getTypeName 
 public java.lang.String getTypeName()
Overrides:
getTypeName in class mesquite.lib.SpecsSet
o getNumberOfGroups 
 public int getNumberOfGroups()
o getGroups 
 public mesquite.lib.TaxaGroup[] getGroups()
Returns an array of all the partition numbers

o getNumberInGroup 
 public int getNumberInGroup(mesquite.lib.TaxaGroup target)
o getNewPropertyStorage 
 public java.lang.Object[] getNewPropertyStorage(int numParts)
gets storage for set of properties

Overrides:
getNewPropertyStorage in class mesquite.lib.ObjectSpecsSet
o getTaxaGroup 
 public mesquite.lib.TaxaGroup getTaxaGroup(int part)
o getTaxaGroup 
 public mesquite.lib.TaxaGroup getTaxaGroup(mesquite.lib.Taxon taxon)

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