#NEXUS [written Sun Sep 21 19:18:18 PDT 2003 by Mesquite version 1.0 (build e57)] BEGIN TAXA; TITLE flies; DIMENSIONS NTAX=48; TAXLABELS nig1 nig2 nig3 nig4 nig5 nig6 nig7 nig8 nig9 nig10 nig11 nig12 met1 met2 met3 met4 met5 met6 met7 met8 met9 met10 met11 met12 moj1 moj2 moj3 moj4 moj5 moj6 moj7 moj8 moj9 moj10 moj11 moj12 pac1 pac2 pac3 pac4 pac5 pac6 pac7 pac8 pac9 pac10 pac11 pac12 ; END; BEGIN CHARACTERS; TITLE wings; DIMENSIONS NCHAR=4; FORMAT DATATYPE = CONTINUOUS; CHARSTATELABELS 1 V1, 2 V2, 3 ACV, 4 PCV ; MATRIX nig1 1.784 1.994 0.1007 0.2488 nig2 1.662 1.946 0.0882 0.2503 nig3 1.92 2.244 0.0678 0.2707 nig4 1.838 2.107 0.0678 0.2653 nig5 1.843 2.111 0.0784 0.2791 nig6 1.953 2.194 0.0671 0.2696 nig7 1.782 2.03 0.0795 0.2678 nig8 1.792 2.137 0.0852 0.2694 nig9 1.889 2.203 0.0746 0.2575 nig10 1.836 2.092 0.0925 0.2592 nig11 1.877 2.13 0.0941 0.2696 nig12 1.826 2.133 0.0741 0.2751 met1 1.451 1.659 0.0805 0.2425 met2 1.672 1.949 0.0754 0.2687 met3 1.67 1.943 0.0745 0.2862 met4 1.783 2.037 0.1074 0.2612 met5 1.734 2.048 0.0814 0.2503 met6 1.624 1.858 0.0736 0.2555 met7 1.697 1.939 0.0871 0.2728 met8 1.695 1.979 0.0923 0.2748 met9 1.552 1.835 0.0674 0.2417 met10 1.7 1.994 0.0875 0.2781 met11 1.723 1.945 0.0808 0.2705 met12 1.688 1.987 0.0875 0.2847 moj1 1.19 1.298 0.0667 0.1871 moj2 1.209 1.336 0.06 0.1962 moj3 1.255 1.387 0.0806 0.2011 moj4 1.224 1.351 0.0666 0.1847 moj5 1.196 1.318 0.0596 0.176 moj6 1.188 1.345 0.074 0.1991 moj7 1.187 1.314 0.0696 0.1745 moj8 1.235 1.371 0.06 0.1877 moj9 1.153 1.29 0.0471 0.1688 moj10 1.208 1.352 0.0731 0.1818 moj11 1.177 1.29 0.0679 0.1777 moj12 1.226 1.363 0.06 0.1909 pac1 1.343 1.479 0.0821 0.1719 pac2 1.429 1.56 0.0731 0.2052 pac3 1.391 1.537 0.0731 0.2192 pac4 1.496 1.673 0.093 0.2283 pac5 1.347 1.514 0.0795 0.1978 pac6 1.311 1.449 0.062 0.1795 pac7 1.424 1.62 0.0682 0.21 pac8 1.411 1.596 0.0787 0.2128 pac9 1.338 1.502 0.0653 0.2077 pac10 1.449 1.618 0.0745 0.231 pac11 1.447 1.603 0.0787 0.2346 pac12 1.465 1.621 0.0765 0.214 ; END; BEGIN TREES; Title stored_trees; LINK Taxa = flies; TRANSLATE 1 nig1, 2 nig2, 3 nig3, 4 nig4, 5 nig5, 6 nig6, 7 nig7, 8 nig8, 9 nig9, 10 nig10, 11 nig11, 12 nig12, 13 met1, 14 met2, 15 met3, 16 met4, 17 met5, 18 met6, 19 met7, 20 met8, 21 met9, 22 met10, 23 met11, 24 met12, 25 moj1, 26 moj2, 27 moj3, 28 moj4, 29 moj5, 30 moj6, 31 moj7, 32 moj8, 33 moj9, 34 moj10, 35 moj11, 36 moj12, 37 pac1, 38 pac2, 39 pac3, 40 pac4, 41 pac5, 42 pac6, 43 pac7, 44 pac8, 45 pac9, 46 pac10, 47 pac11, 48 pac12; TREE colored = (((1[%color = 5 ],(2[%color = 5 ],(3[%color = 5 ],(4[%color = 5 ],(5[%color = 5 ],(6[%color = 5 ],(7[%color = 5 ],(8[%color = 5 ],(9[%color = 5 ],(10[%color = 5 ],(11[%color = 5 ],12[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ])[%color = 5 ],(13[%color = 8 ],(14[%color = 8 ],(15[%color = 8 ],(16[%color = 8 ],(17[%color = 8 ],(18[%color = 8 ],(19[%color = 8 ],(20[%color = 8 ],(21[%color = 8 ],(22[%color = 8 ],(23[%color = 8 ],24[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ])[%color = 8 ]),((25[%color = 10 ],(26[%color = 10 ],(27[%color = 10 ],(28[%color = 10 ],(29[%color = 10 ],(30[%color = 10 ],(31[%color = 10 ],(32[%color = 10 ],(33[%color = 10 ],(34[%color = 10 ],(35[%color = 10 ],36[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ])[%color = 10 ],(37[%color = 11 ],(38[%color = 11 ],(39[%color = 11 ],(40[%color = 11 ],(42[%color = 11 ],(41[%color = 11 ],(43[%color = 11 ],(44[%color = 11 ],(45[%color = 11 ],(46[%color = 11 ],(47[%color = 11 ],48[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])[%color = 11 ])); END; BEGIN LABELS; TAXAGROUPLABEL nig COLOR = (RGB 1.0 0.031372553 0.258823551) ; TAXAGROUPLABEL met COLOR = (RGB 0.258823551 1.0 0.086274549) ; TAXAGROUPLABEL moj COLOR = (RGB 1.0 0.62745098 0.058823551) ; TAXAGROUPLABEL pac COLOR = (RGB 0.02745098 0.584313751 1.0) ; END; BEGIN SETS; TAXPARTITION * UNTITLED = nig : 1 - 12, met : 13 - 24, moj : 25 - 36, pac : 37 - 48; TAXPARTITION species = nig : 1 - 12, met : 13 - 24, moj : 25 - 36, pac : 37 - 48; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = Squared: 1 - 4; END; BEGIN NOTES; TEXT FILE TEXT = 'This file shows data of Eric Dyreson for wing characteristics measured for specimens of four species of Drosophila. The taxa are individual specimens, and they are grouped (by color) into four species. (The grouping is done by a taxa partition, which can be done via the List of Taxa window).^n^nAbove right is a plot of character 2 versus character 1, which are obviously highly correlated because of their correlation with size. This plot is phylogeny-free.'; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = Brownian_default: 1 - 4; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 208212565903807533; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 124634251740354766; checksum 0 578547273; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #124634251740354766 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setSize 390 464; setLocation 6 4; setFont SanSerif; setFontSize 10; offInfoBar; setExplanationSize 20; setAnnotationSize 20; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; toggleShowNames on; toggleTight off; toggleShowChanges on; toggleShowStates on; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; endTell; endTell; newAssistant #mesquite.charts.TaxaScattergram.TaxaScattergram; tell It; setTaxonSource #mesquite.minimal.StoredTaxa.StoredTaxa; tell It; setTaxa #208212565903807533; endTell; setTaxa #208212565903807533; axesSame; setValues #mesquite.cont.ContinuousStatesT.ContinuousStatesT; tell It; getCharacterSource #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed; tell It; setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters; tell It; setDataSet #124634251740354766; endTell; endTell; setCharacter 2; setItem 0; endTell; showNamesToggle on; getCharter #mesquite.charts.ItemsBiplot.ItemsBiplot; tell It; getWindow; tell It; setX 1; setY 2; setSize 493 450; setLocation 420 7; setFont SanSerif; setFontSize 10; onInfoBar; setExplanationSize 20; setAnnotationSize 20; getToolPalette; tell It; endTell; setActive; endTell; enableCalculations; getEmployee #mesquite.charts.Scattergram.Scattergram; tell It; markerSize 10; toggleJoin off; toggleShowDots on; movingWindowSize 1; sumByBlocks off; endTell; endTell; setChartVisible; doCounts; showWindow; endTell; newAssistant #mesquite.basic.ExamplesNavigator.ExamplesNavigator; tell It; setNextFileName '02-wingsPCA.nex'; setPrevFileName '00-introduction.nex'; getWindow; tell It; setSize 473 148; setLocation 101 548; setFont SanSerif; setFontSize 10; offInfoBar; setExplanationSize 0; setAnnotationSize 0; setExplanation 'This file shows data of Eric Dyreson for wing characteristics measured for specimens of four species of Drosophila. The taxa are individual specimens, and they are grouped (by color) into four species. (The grouping is done by a taxa partition, which can be done via the List of Taxa window).^n^nAbove right is a plot of character 2 versus character 1, which are obviously highly correlated because of their correlation with size. This plot is phylogeny-free.'; setTitle Raw_data; toggleFileNames off; setPrevButtonName Previous; setNextButtonName Next; endTell; showWindow; endTell; endTell; end;