#NEXUS [written Sat May 19 21:23:36 CEST 2007 by Mesquite version 1.12+ (build i32) at Thrandina.local/10.0.2.4 (Wayne Maddison)] BEGIN AUTHORS; AUTHOR NAME = Wayne_Maddison CODE = WM LASTSAVER; AUTHOR NAME = Bullwinkle CODE = BW; AUTHOR NAME = Snidely_Whiplash CODE = SW; END; BEGIN TAXA; TITLE Fubonidians; DIMENSIONS NTAX=4; TAXLABELS Fubonidia Snorolopa Quidnubia Zorabynyx ; IDS RFS102ad402d618 RFS102ad402d639 RFS102ad402d6310 RFS102ad402d6311 ; BLOCKID WM10637dc5e542; END; BEGIN CHARACTERS; TITLE Structure_&_Color; DIMENSIONS NCHAR=4; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1"; CHARSTATELABELS 1 knobble / flat dimpled, 2 gizmoid / pointy spatulate, 3 zibinator_shape / smooth edgy, 4 zibinator_setae / single_sided double_sided ; MATRIX Fubonidia 1011 Snorolopa 1011 Quidnubia 0100 Zorabynyx 0101 ; IDS RFS102ad3fa0c38 RFS102ad3fa0e39 RFS102ad3fa0e310 RFS102ad3fa0e311 ; BLOCKID WM112a5ca6e280; END; BEGIN TREES; Title Basic_Trees; LINK Taxa = Fubonidians; TRANSLATE 1 Fubonidia, 2 Snorolopa, 3 Quidnubia, 4 Zorabynyx; TREE 'First Tree+' = (((1,3),2),4); TREE 'Second Tree+' = ((2,1),(4,3)); TREE 'Third Tree+' = (1,((4,2),3)); TREE 'Polytomous+' = ((1,3),4,2); TREE 'Partial tree+' = ((1,4),3); END; BEGIN NOTES; TEXT TAXON = 1 CHARACTER = 1 TEXT = 'This striking dimple was first noticed by Snerp (1965)'; SUCM N = lastModifiedAuthor S = Bullwinkle; TEXT CHARACTER = 1 STATE = 0 TEXT = this_is_really_flat; TEXT CHARACTER = 1 STATE = 1 TEXT = dimples_are_quite_strikingly_deep; AN T = 1 C = 1 AU = _ DATECREATED = 'Wed Apr 21 17:13:52 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245cc68 I = 'fubonidianImages/fubonidiaKnobble.gif' TF = (CM 'This is a distinct dimple, unlike others among the fubonidians. Quite pretty, actually.') TF = (R Illustration_from_specimen_AMNH_6788975) L = (TEXT = distinct_dimple FONT = SanSerif COLOR = Blue SIZE = 14 x = -78 y = 24 fixedToImage = true pointerX = 105 pointerY = 157 showpointer = true width = 57 ); AN T = 1 C = 1 AU = _ DATECREATED = 'Sat Apr 24 09:29:42 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d089 I = _ TF = (CM '"In contrast to other fubonidians, the nominal genus has a pronounced and distinct dimple on the upper surface of the knobble. While we can only speculate on its function, I might note that only Fubonidia is found in high salt environments."') TF = (R Snerp_1965); AN T = 2 C = 1 AU = _ DATECREATED = 'Wed Apr 21 17:14:08 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d0c10 I = 'fubonidianImages/snorolopaKnobble.gif' TF = (CM A_rather_shallow_dimple) ; AN T = 3 C = 1 AU = _ DATECREATED = 'Wed Apr 21 17:14:19 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d0e11 I = 'fubonidianImages/quidnubiaKnobble.gif' TF = (CM Note_absence_of_dimple.) ; AN T = 4 C = 1 AU = _ DATECREATED = 'Wed Apr 21 17:14:30 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d2312 I = 'fubonidianImages/zorabynyxKnobble.gif' TF = (CM 'Although Spuff (1978) claimed a dimple was present in Zorabynyx, all subsequent authors have agreed on its absence.') ; AN T = 1 C = 2 AU = _ DATECREATED = 'Wed Apr 21 17:14:44 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d3113 I = 'fubonidianImages/fubonidiaGizmoid.gif' TF = (CM ) ; AN T = 2 C = 2 AU = _ DATECREATED = 'Wed Apr 21 17:14:54 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d4414 I = 'fubonidianImages/snorolopaGizmoid.gif' TF = (CM ) ; AN T = 3 C = 2 AU = _ DATECREATED = 'Wed Apr 21 17:15:07 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d4b15 I = 'fubonidianImages/quidnubiaGizmoid.gif' TF = (CM ) ; AN T = 4 C = 2 AU = _ DATECREATED = 'Wed Apr 21 17:15:20 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d5316 I = 'fubonidianImages/zorabynyxGizmoid.gif' TF = (CM ) L = (TEXT = impressive! FONT = SanSerif COLOR = Red SIZE = 12 x = 49 y = 16 fixedToImage = true pointerX = 95 pointerY = 60 showpointer = false width = 100 ); AN T = 1 C = 3 AU = _ DATECREATED = 'Wed Apr 21 17:15:32 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d5a17 I = 'fubonidianImages/fubonidiaZibinator.gif' TF = (CM ) ; AN T = 2 C = 3 AU = _ DATECREATED = 'Wed Apr 21 17:15:43 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d6118 I = 'fubonidianImages/snorolopaZibinator.gif' TF = (CM ) ; AN T = 3 C = 3 AU = _ DATECREATED = 'Wed Apr 21 17:16:02 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d6819 I = 'fubonidianImages/quidnubiaZibinator.gif' TF = (CM ) ; AN T = 4 C = 3 AU = _ DATECREATED = 'Wed Apr 21 17:16:17 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d6f20 I = 'fubonidianImages/zorabynyxZibinator.gif' TF = (CM ) ; AN T = 1 C = 4 AU = _ DATECREATED = 'Wed Apr 21 17:16:48 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d7521 I = 'fubonidianImages/fubonidiaZibinator.gif' TF = (CM ) ; AN T = 2 C = 4 AU = _ DATECREATED = 'Wed Apr 21 17:17:00 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d7c22 I = 'fubonidianImages/snorolopaZibinator.gif' TF = (CM ) ; AN T = 3 C = 4 AU = _ DATECREATED = 'Wed Apr 21 17:17:10 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d8223 I = 'fubonidianImages/quidnubiaZibinator.gif' TF = (CM ) ; AN T = 4 C = 4 AU = _ DATECREATED = 'Wed Apr 21 17:17:19 PDT 2004' DM = 2005.3.16.12.53.23 ID = BW102ad245d8924 I = 'fubonidianImages/zorabynyxZibinator.gif' TF = (CM ) ; END; BEGIN CHARCHANGEHISTORY; Record; C 0 0 ( BW 2005.3.16.12.53.23 1 ) ; C 0 1 ( BW 2005.3.16.12.53.23 1 ) ; C 0 2 ( BW 2005.3.16.12.53.23 0 ) ; C 0 3 ( BW 2005.3.16.13.9.14 0 ) ( BW 2005.3.16.12.53.23 0 ) ; C 1 0 ( BW 2005.3.16.12.53.23 0 ) ; C 1 1 ( BW 2005.3.16.12.53.23 0 ) ; C 1 2 ( BW 2005.3.16.12.53.23 1 ) ; C 1 3 ( BW 2005.3.16.12.53.23 1 ) ; C 2 0 ( SW 2005.3.16.13.5.54 1 ) ( BW 2005.3.16.12.53.23 0 ) ; C 2 1 ( BW 2005.3.16.12.53.23 1 ) ; C 2 2 ( BW 2005.3.16.12.53.23 0 ) ; C 2 3 ( BW 2005.3.16.12.53.23 0 ) ; C 3 0 ( BW 2005.3.16.12.53.23 1 ) ; C 3 1 ( BW 2005.3.16.12.53.23 1 ) ; C 3 2 ( BW 2005.3.16.12.53.23 0 ) ; C 3 3 ( BW 2005.3.16.12.53.23 1 ) ; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 4; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 4; TYPESET Current_Parsimony_Models = unord: 1 - 4; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 2; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8476784597994698209 WM10637dc5e542; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 974864624972105434 WM112a5ca6e280; tell It; attachments ; endTell; checksum 0 937508058; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #974864624972105434 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1037 380; setLocation 18 34; setFont SanSerif; setFontSize 14; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleTight off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleShowDefaultCharNames off; toggleConstrainCW on; setColumnWidth 16; toggleBirdsEye off; toggleColorsPanel off; birdsEyeWidth 2; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip on; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.collab.ChgHistoryInfo.ChgHistoryInfo; tell It; togglePanel off; endTell; getEmployee #mesquite.silk.AnnotSummary.AnnotSummary; tell It; togglePanel off; endTell; getEmployee #mesquite.silk.CellImages.CellImages; tell It; showColors off; togglePanel off; toggleAnnotations off; toggleHistory off; toggleLocations off; endTell; getEmployee #mesquite.silk.StateImages.StateImages; tell It; showColors off; togglePanel on; toggleStateAnnotations on; toggleCharAnnotations off; toggleLocations off; getEmployee #mesquite.silk.IndexedStateImages.IndexedStateImages; tell It; load; endTell; endTell; getEmployee #mesquite.silk.aaManageImageIndices.aaManageImageIndices; tell It; setIndexDirectory indexedImages; setLocal; setPrevIndexBase 'http://mesquiteproject.org/SILK/examples/indexedImages'; reset; endTell; endTell; endTell; newAssistant #mesquite.basic.ExamplesNavigator.ExamplesNavigator; tell It; setPrevFileName '02-indexedImagesCellsR.nex'; getWindow; tell It; popOut; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1037 189; setLocation 20 559; setFont SanSerif; setFontSize 14; setExplanation 'Here the images shown are to illustrate states. The panel illustrates the states from the character over which the cursor moves, or which is selected in some way.^n^nAlso note that the State Names Strip just below the matrix can be turned on to indicate state names. This is more consistently shown than the notes in the explanation area at the bottom of the window.'; setTitle State_Images; toggleFileNames off; setPrevButtonName Previous; setNextButtonName Next; endTell; showWindow; endTell; endTell; end;