[Mesquitelist] discrepancy in taxa samples

[m. candida]

I have 8 categorical character states for 134 taxa. The tree I am using
(supertree constructed by Bidinda-Edmonds et al, Nature, 2007) has
several thousand taxa. Is there a way to use this tree with my data
without removing the thousands of irrelevant taxa? I would like to
reconstruct ancestral states under parsimony and ML. Any advice would
be appreciated.

Regards,
Therese
 		 	   		  
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